stangene.species¶

Species-specific configuration, classification patterns, and Excel corruption detection.

Species-specific configuration and classification patterns.

class stangene.species.SpeciesConfig(name, ensembl_prefix, transcript_prefix, naming_convention, reference_sources=<factory>)[source]¶

Bases: object

Configuration for a species’ gene naming and reference sources.

name: str¶

ensembl_prefix: str¶

transcript_prefix: str¶

naming_convention: str¶

reference_sources: dict¶

stangene.species.get_species_config(species)[source]¶

Get configuration for a species. Raises ValueError if unknown.

Return type:: SpeciesConfig