Installation

From source

git clone https://github.com/chansigit/sjanpy.git
cd sjanpy
pip install .

For ML pipeline support (sjanpy.ml):

pip install ".[ml]"

For development:

pip install -e ".[dev]"

Dependencies

sjanpy requires Python >= 3.8 and the following packages:

• numpy

• pandas

• scipy

• matplotlib

• seaborn

• scanpy

• anndata

• adjustText

• statsmodels

• scikit-learn

• plotly

Optional (for sjanpy.ml):

• torch

• h5py

• safetensors